Defined human tri-lineage brain microtissues

Takeshi Uenaka, Sascha Jung, Ishan Kumar, Kit Vodehnal, Mohit Rastogi, Yongjin Yoo, Mark Koontz, Christian Thome, Wanhua Li, Tamara Chan, Erin M Green, Kirill Chesnov, Zijun Sun, Shuyuan Zhang, Jinzhao Wang, Anthony Venida, Anne-Laure Mahul Mellier, Micaiah Atkins, Meredith Jackrel, Jan M Skotheim, Tony Wyss-Coray, Monther Abu-Remaileh, Hilal A Lashuel, Michael C Bassik, Thomas C Südhof, Antonio Del Sol, Erik Ullian, Marius Wernig

bioRxiv [Preprint]. 2025 Aug 7:2025.08.05.668605. doi: 10.1101/2025.08.05.668605.

ABSTRACT

Microglia are the immune cells of the central nervous system and are thought to be key players in both physiological and disease conditions. Several microglial features are poorly conserved between mice and human, such as the function of the neurodegeneration-associated immune receptor Trem2. Induced pluripotent stem cell (iPSC)-derived microglia offer a powerful opportunity to generate and study human microglia. However, human iPSC-derived microglia often exhibit activated phenotypes in vitro, and assessing their impact on other brain cell types remains challenging due to limitations in current co-culture systems. Here, we developed fully defined brain microtissues, composed of human iPSC-derived neurons, astrocytes, and microglia, co-cultured in 2D or 3D formats. Our microtissues are stable and self-sufficient over time, requiring no exogenous cytokines or growth factors. All three cell types exhibit morphologies characteristic of their in vivo environment and show functional properties. Co-cultured microglia develop more homeostatic phenotypes compared to microglia exposed to exogenous cytokines. Hence, these tri-cultures provide a unique approach to investigate cell-cell interactions between brain cell types. We found that astrocytes and not neurons are sufficient for microglial survival and maturation, and that astrocyte-derived M-CSF is essential for microglial survival. Single-cell and single-nucleus RNA sequencing analyses nominated a network of reciprocal communication between cell types. Brain microtissues faithfully recapitulated pathogenic α-synuclein seeding and aggregation, suggesting their usefulness as human cell models to study not only normal but also pathological cell biological processes.

PMID:40799568 | PMC:PMC12340862 | DOI:10.1101/2025.08.05.668605